Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs78304949 chr14:73623174 C/T 3.87E-6 365 20.6 13.3 4.93 KM Plot
LIHC rs78334494 chr6:169937627 G/A 1.76E-5 365 19.83 18.8 4.27 KM Plot
LIHC rs78407517 chr2:37190025 G/A 1.31E-5 362 20.45 13.2 8.73 KM Plot
LIHC rs78429093 chr2:37094502 C/A 1.66E-5 368 20.45 12.17 8.73 KM Plot
LIHC rs78527034 chr2:37166475 C/A 1.1E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs78562834 chr2:37254003 G/A 2.79E-5 367 20.27 14.9 8.73 KM Plot
LIHC rs78615239 chr11:96742563 T/C 1.02E-5 365 20.05 18.8 2.63 KM Plot
LIHC rs78632966 chr2:37099470 C/T 1.32E-5 365 20.4 12.17 8.73 KM Plot
LIHC rs7868300 chr9:132183550 A/G 4.0E-13 368 0.63 20.27 19.53 KM Plot
LIHC rs78720781 chr14:73471534 T/C 2.52E-6 368 20.27 13.17 4.93 KM Plot
LIHC rs78759575 chr2:37120797 G/A 1.4E-5 368 20.4 13.37 8.73 KM Plot
LIHC rs78822692 chr6:169945671 G/A 1.79E-5 366 19.87 18.8 4.27 KM Plot
LIHC rs78933845 chr15:91753243 A/G 1.66E-5 367 20.5 14.33 9.87 KM Plot
LIHC rs79006025 chr5:147046226 A/G 4.13E-7 366 20.05 16.2 4.67 KM Plot
LIHC rs79170646 chr3:7939218 A/G 1.88E-7 368 19.17 23.18 3.03 KM Plot